Variant report

Variant	rs4410533
Chromosome Location	chr19:40124369-40124370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10009327	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10021132	0.89[EUR][1000 genomes]
rs10029947	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10031646	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10452174	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11097553	0.89[EUR][1000 genomes]
rs11936576	0.90[EUR][1000 genomes]
rs11941787	0.89[EUR][1000 genomes]
rs13112292	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13134423	0.89[EUR][1000 genomes]
rs1462763	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28378393	0.89[EUR][1000 genomes]
rs34817974	0.89[EUR][1000 genomes]
rs4075059	0.85[EUR][1000 genomes]
rs4295270	0.90[EUR][1000 genomes]
rs4301123	0.85[EUR][1000 genomes]
rs4305515	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4317212	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4359906	0.89[EUR][1000 genomes]
rs4407512	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4443291	0.90[EUR][1000 genomes]
rs4538486	0.89[EUR][1000 genomes]
rs4540053	0.90[EUR][1000 genomes]
rs4599417	0.85[EUR][1000 genomes]
rs4643817	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4699304	0.81[EUR][1000 genomes]
rs4699307	0.90[EUR][1000 genomes]
rs4699308	0.90[EUR][1000 genomes]
rs58721082	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6532664	0.89[EUR][1000 genomes]
rs6825931	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6835997	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6855655	0.85[EUR][1000 genomes]
rs6858100	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7660918	0.94[EUR][1000 genomes]
rs7670330	0.85[EUR][1000 genomes]
rs7680378	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7684189	0.89[EUR][1000 genomes]
rs9784400	0.90[EUR][1000 genomes]
rs9994700	0.85[EUR][1000 genomes]
rs9997275	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv34120	chr19:40044635-40131820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1062653	chr19:40123868-40163241	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1057361	chr19:40123868-40310996	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40122000-40127600	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links