Variant report

Variant	rs4410935
Chromosome Location	chr8:119778238-119778239
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:119778052-119778393	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119776925..119779854-chr8:119779956..119782322,2	K562	blood:

Variant related genes	Relation type
RPS26P35	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1493937	0.83[CHB][hapmap]
rs55864378	0.81[AMR][1000 genomes]
rs959454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119774600-119781800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:119775800-119778600	Weak transcription	HSMM	muscle
3	chr8:119775800-119780400	Enhancers	Osteobl	bone
4	chr8:119776000-119779000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:119776400-119780400	Enhancers	NHDF-Ad	bronchial
6	chr8:119776400-119780800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:119776800-119779000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:119776800-119779200	Weak transcription	Aorta	Aorta
9	chr8:119777400-119780400	Enhancers	HSMMtube	muscle
10	chr8:119777600-119778800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:119777600-119779000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:119777600-119779000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:119777600-119781200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:119777800-119778800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:119777800-119778800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr8:119777800-119778800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:119777800-119778800	Weak transcription	NH-A	brain
18	chr8:119777800-119779000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:119777800-119779000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:119777800-119779200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:119778000-119778400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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