Variant report

Variant	rs4411659
Chromosome Location	chr2:188033890-188033891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1487387	1.00[AMR][1000 genomes]
rs16828650	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs16828654	1.00[AMR][1000 genomes]
rs4074665	1.00[AMR][1000 genomes]
rs4338931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4599073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4667151	1.00[AMR][1000 genomes]
rs6739126	1.00[AMR][1000 genomes]
rs73038846	0.85[AFR][1000 genomes]
rs73038879	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038882	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038891	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045668	1.00[AMR][1000 genomes]
rs73049413	1.00[AMR][1000 genomes]
rs7584166	1.00[AMR][1000 genomes]
rs7591971	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv875553	chr2:187856937-188067355	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv431857	chr2:187930023-188098798	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1003061	chr2:187950057-188282330	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1000617	chr2:187950057-188290511	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv875555	chr2:188023107-188143677	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188030800-188035000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:188031000-188034800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:188033000-188035200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:188033200-188034400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr2:188033200-188035000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr2:188033200-188035000	Enhancers	Primary B cells from cord blood	blood
7	chr2:188033200-188035000	Enhancers	Primary hematopoietic stem cells	blood
8	chr2:188033400-188034400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr2:188033400-188034400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:188033400-188034400	Enhancers	HUVEC	blood vessel
11	chr2:188033600-188036800	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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