Variant report

Variant	rs4412919
Chromosome Location	chr15:58383906-58383907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58377122..58381403-chr15:58381478..58386444,6	K562	blood:
2	chr15:58382678..58385376-chr15:58387559..58389345,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10851630	0.81[CHB][hapmap]
rs10851631	0.81[CHB][hapmap]
rs11071365	0.87[CHB][hapmap]
rs11855259	0.81[CHB][hapmap]
rs12148907	0.85[CHB][hapmap]
rs12901462	0.87[CHB][hapmap]
rs12903474	0.80[CHB][hapmap]
rs12903551	0.81[CHB][hapmap]
rs12907038	0.80[CHB][hapmap]
rs12908953	0.81[CHB][hapmap]
rs12910113	0.81[CHB][hapmap]
rs12910902	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12911981	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12915901	0.81[CHB][hapmap]
rs12916872	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3204689	0.81[CHB][hapmap]
rs3784260	0.81[CHB][hapmap]
rs3784262	0.81[CHB][hapmap]
rs3784263	0.81[CHB][hapmap]
rs4646568	0.87[CHB][hapmap]
rs4646572	0.87[CHB][hapmap]
rs4646576	0.80[CHB][hapmap]
rs4646616	0.86[CHB][hapmap]
rs4646636	0.81[CHB][hapmap]
rs4646638	0.81[CHB][hapmap]
rs4646640	0.81[CHB][hapmap]
rs7165247	0.81[CHB][hapmap]
rs7170471	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7495968	0.81[CHB][hapmap]
rs8031215	0.84[ASN][1000 genomes]
rs8036453	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs9325	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569596	chr15:58355798-58408763	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58379200-58387800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links