Variant report

Variant	rs4419163
Chromosome Location	chr19:54327568-54327569
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11670732	0.84[ASN][1000 genomes]
rs4432362	0.90[ASN][1000 genomes]
rs4806751	0.82[ASN][1000 genomes]
rs62143207	0.95[ASN][1000 genomes]
rs7507992	0.82[ASN][1000 genomes]
rs7508353	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063630	chr19:53591444-54419183	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	282 gene(s)	inside rSNPs	diseases
2	nsv1061889	chr19:54024352-54340923	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	221 gene(s)	inside rSNPs	diseases
3	nsv531307	chr19:54056296-54402720	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	244 gene(s)	inside rSNPs	diseases
4	nsv1064208	chr19:54103646-54528887	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	309 gene(s)	inside rSNPs	diseases
5	nsv1058096	chr19:54164595-54374895	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	236 gene(s)	inside rSNPs	diseases
6	nsv912387	chr19:54175037-54330232	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	176 gene(s)	inside rSNPs	diseases
7	nsv1065337	chr19:54213042-54391859	Active TSS Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	202 gene(s)	inside rSNPs	diseases
8	nsv1064317	chr19:54238294-54465245	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	183 gene(s)	inside rSNPs	diseases
9	nsv544073	chr19:54238294-54465245	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	183 gene(s)	inside rSNPs	diseases
10	esv2753726	chr19:54256988-55204403	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	325 gene(s)	inside rSNPs	diseases
11	nsv1064558	chr19:54276722-54460745	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	153 gene(s)	inside rSNPs	diseases
12	nsv912388	chr19:54294482-54367597	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	nsv544074	chr19:54325041-54366732	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
14	esv3406630	chr19:54325690-54327838	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:54325400-54327800	Active TSS	Primary B cells from cord blood	blood
2	chr19:54326200-54327800	Active TSS	Primary monocytes fromperipheralblood	blood
3	chr19:54326200-54327800	Active TSS	Monocytes-CD14+_RO01746	blood
4	chr19:54326800-54328600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr19:54327000-54327600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr19:54327000-54327600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:54327000-54327600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr19:54327000-54327600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr19:54327000-54327600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr19:54327000-54327600	Active TSS	Right Atrium	heart
11	chr19:54327000-54327600	ZNF genes & repeats	Spleen	Spleen
12	chr19:54327000-54327800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr19:54327000-54327800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr19:54327000-54327800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:54327000-54328000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr19:54327000-54328400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:54327200-54327600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr19:54327200-54327600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr19:54327200-54327600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:54327200-54327600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr19:54327200-54327800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr19:54327200-54327800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr19:54327200-54328000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr19:54327400-54327600	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr19:54327400-54327600	Bivalent/Poised TSS	Adipose Nuclei	Adipose
26	chr19:54327400-54327600	Active TSS	Liver	Liver
27	chr19:54327400-54327600	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr19:54327400-54327600	Flanking Active TSS	Placenta	Placenta
29	chr19:54327400-54327600	Bivalent/Poised TSS	Lung	lung
30	chr19:54327400-54327600	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
31	chr19:54327400-54327600	Flanking Active TSS	K562	blood
32	chr19:54327400-54327800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr19:54327400-54328000	Enhancers	Primary B cells from peripheral blood	blood
34	chr19:54327400-54328600	Enhancers	HepG2	liver

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