Variant report

Variant	rs4421970
Chromosome Location	chr16:81727904-81727905
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81726984..81731246-chr16:81732450..81737036,4	MCF-7	breast:
2	chr16:81719217..81721536-chr16:81727180..81729899,2	MCF-7	breast:
3	chr16:81727343..81729891-chr16:81732559..81735043,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11150400	0.90[ASN][1000 genomes]
rs11641014	0.94[ASN][1000 genomes]
rs11642818	0.90[JPT][hapmap]
rs11644560	0.89[ASN][1000 genomes]
rs11646472	0.94[ASN][1000 genomes]
rs2317497	0.92[ASN][1000 genomes]
rs2873480	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3751857	0.89[ASN][1000 genomes]
rs4281702	0.92[ASN][1000 genomes]
rs4423411	0.91[ASN][1000 genomes]
rs4888165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4888167	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4889363	0.81[ASN][1000 genomes]
rs4889364	0.94[ASN][1000 genomes]
rs4889365	0.94[ASN][1000 genomes]
rs4889366	1.00[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs55669104	0.87[ASN][1000 genomes]
rs60107344	0.94[ASN][1000 genomes]
rs68056614	0.94[ASN][1000 genomes]
rs74031237	0.92[ASN][1000 genomes]
rs74031241	0.92[ASN][1000 genomes]
rs753108	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
3	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81688400-81736800	Weak transcription	NHDF-Ad	bronchial
2	chr16:81713200-81740600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr16:81713200-81744400	Weak transcription	Fetal Kidney	kidney
4	chr16:81721800-81748400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr16:81722000-81738400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr16:81724000-81743400	Strong transcription	HepG2	liver
7	chr16:81724400-81745800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr16:81724600-81733000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr16:81724600-81734000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr16:81724600-81743400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr16:81724600-81746000	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr16:81724800-81728200	Genic enhancers	Stomach Mucosa	stomach
13	chr16:81724800-81728400	Genic enhancers	Lung	lung
14	chr16:81724800-81732000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr16:81724800-81736400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr16:81724800-81740600	Strong transcription	Gastric	stomach
17	chr16:81724800-81741400	Strong transcription	Liver	Liver
18	chr16:81724800-81743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr16:81724800-81743400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr16:81724800-81743400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr16:81724800-81743400	Strong transcription	Dnd41	blood
22	chr16:81724800-81744400	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr16:81724800-81744600	Strong transcription	Primary T cells from cord blood	blood
24	chr16:81725000-81728200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr16:81725000-81728800	Strong transcription	Primary hematopoietic stem cells	blood
26	chr16:81725000-81728800	Strong transcription	Fetal Intestine Large	intestine
27	chr16:81725000-81731600	Genic enhancers	Adipose Nuclei	Adipose
28	chr16:81725000-81733200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr16:81725000-81744400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr16:81725000-81744600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr16:81725000-81746000	Strong transcription	Thymus	Thymus
32	chr16:81725200-81728000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr16:81725200-81728000	Strong transcription	Aorta	Aorta
34	chr16:81725200-81728400	Strong transcription	Fetal Intestine Small	intestine
35	chr16:81725200-81728800	Strong transcription	Pancreas	Pancrea
36	chr16:81725200-81729000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr16:81725200-81729000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr16:81725200-81729400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr16:81725200-81743200	Strong transcription	Primary B cells from cord blood	blood
40	chr16:81725400-81728000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr16:81725400-81728000	Genic enhancers	Brain Germinal Matrix	brain
42	chr16:81725400-81728200	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr16:81725400-81728200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr16:81725400-81728200	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr16:81725400-81728200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr16:81725400-81728200	Genic enhancers	Fetal Muscle Trunk	muscle
47	chr16:81725400-81728400	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr16:81725400-81728600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr16:81725400-81728600	Genic enhancers	Rectal Smooth Muscle	rectum
50	chr16:81725400-81729600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links