Variant report

Variant	rs4422880
Chromosome Location	chr9:100808755-100808756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100679327..100688755-chr9:100804829..100810921,12	K562	blood:
2	chr9:100743537..100749297-chr9:100805473..100813198,12	K562	blood:
3	chr9:100745241..100747165-chr9:100808229..100811065,2	MCF-7	breast:
4	chr9:100697076..100699494-chr9:100808652..100811016,2	K562	blood:
5	chr9:100661987..100664493-chr9:100807895..100810404,2	K562	blood:
6	chr9:100458298..100461061-chr9:100806544..100809239,2	K562	blood:
7	chr9:100743649..100747393-chr9:100806371..100809307,4	K562	blood:
8	chr9:100686261..100688755-chr9:100806613..100809213,2	K562	blood:
9	chr9:100796501..100799835-chr9:100807798..100809968,3	K562	blood:
10	chr9:100806589..100809484-chr9:100810464..100812482,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000136936	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55684882	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575571	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028870	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029824	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852752	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868838	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3483159	chr9:100806167-100814815	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	esv3483160	chr9:100806167-100814815	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100802400-100809600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:100807400-100808800	Active TSS	Duodenum Mucosa	Duodenum
3	chr9:100807400-100808800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr9:100807400-100810000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:100807600-100808800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:100807600-100809000	Active TSS	HSMM	muscle
7	chr9:100807600-100809800	Active TSS	GM12878-XiMat	blood
8	chr9:100807600-100818400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:100807800-100808800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:100807800-100809200	Active TSS	K562	blood
11	chr9:100808000-100810600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr9:100808200-100808800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr9:100808400-100809000	Enhancers	Primary B cells from peripheral blood	blood
14	chr9:100808400-100809000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr9:100808400-100809000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:100808400-100809000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr9:100808400-100809200	Weak transcription	Thymus	Thymus
18	chr9:100808400-100810000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr9:100808400-100810200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr9:100808400-100810200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr9:100808400-100810600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr9:100808400-100818400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:100808400-100818400	Weak transcription	Fetal Thymus	thymus
24	chr9:100808600-100808800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr9:100808600-100808800	Flanking Active TSS	HepG2	liver
26	chr9:100808600-100809000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr9:100808600-100809600	Enhancers	Primary T cells from cord blood	blood
28	chr9:100808600-100810000	Flanking Active TSS	Dnd41	blood
29	chr9:100808600-100812400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr9:100808600-100812800	Enhancers	Primary hematopoietic stem cells	blood
31	chr9:100808600-100816200	Weak transcription	Primary B cells from cord blood	blood

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