Variant report

Variant	rs4423502
Chromosome Location	chr18:25057219-25057220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1893230	0.89[AFR][1000 genomes]
rs1941167	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1941168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1941174	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1941178	1.00[AMR][1000 genomes]
rs2186953	0.94[AFR][1000 genomes]
rs4343366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4349232	0.80[AFR][1000 genomes]
rs4545898	0.83[AFR][1000 genomes]
rs7506170	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8095960	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331699	chr18:24864438-25095929	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv833601	chr18:24908240-25080975	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv833602	chr18:24993030-25180823	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25053600-25063400	Weak transcription	Fetal Intestine Small	intestine
2	chr18:25055800-25057400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:25056200-25057400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr18:25056400-25057600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr18:25056600-25060000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr18:25056600-25060200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr18:25057200-25060200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr18:25057200-25063200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr18:25057200-25064000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links