Variant report

Variant	rs4426065
Chromosome Location	chr10:117902965-117902966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117423951..117424749-chr10:117902548..117903357,2	MCF-7	breast:
2	chr10:117423894..117424788-chr10:117902727..117903483,6	MCF-7	breast:
3	chr10:117893470..117897343-chr10:117899899..117904447,5	MCF-7	breast:
4	chr10:117424325..117424852-chr10:117902573..117903121,2	MCF-7	breast:
5	chr10:117896908..117906858-chr10:118026245..118033933,19	MCF-7	breast:
6	chr10:117902634..117903478-chr10:118030267..118031232,2	MCF-7	breast:
7	chr10:117423870..117424874-chr10:117902617..117903573,9	MCF-7	breast:
8	chr10:117902736..117903478-chr10:118030267..118031114,2	MCF-7	breast:
9	chr10:117432891..117435605-chr10:117901263..117903123,2	MCF-7	breast:
10	chr10:117902365..117904587-chr10:117905963..117908777,2	MCF-7	breast:
11	chr10:117900022..117903486-chr10:117940842..117944873,4	MCF-7	breast:
12	chr10:117900277..117904183-chr10:118030891..118034394,3	MCF-7	breast:
13	chr10:117900756..117903776-chr10:118021807..118024348,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12762003	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775807	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094225	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094234	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420242	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34104075	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34755001	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35175214	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237495	0.86[AFR][1000 genomes]
rs4751952	0.86[AFR][1000 genomes]
rs4751954	0.86[AFR][1000 genomes]
rs66765527	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74160636	0.86[AFR][1000 genomes]
rs74160637	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117893000-117903000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:117894000-117907200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:117899200-117903000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:117901800-117918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:117902600-117903600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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