Variant report

Variant	rs4428296
Chromosome Location	chr4:96354161-96354162
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4277782	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv879626	chr4:96347978-96388651	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96350800-96384400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96351200-96361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:96351400-96359600	Weak transcription	Fetal Lung	lung
4	chr4:96352800-96354200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:96352800-96354600	Enhancers	Brain Hippocampus Middle	brain
6	chr4:96353200-96356800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr4:96353600-96354200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:96353600-96354200	Enhancers	Brain Anterior Caudate	brain
9	chr4:96353600-96354200	Enhancers	Brain Substantia Nigra	brain
10	chr4:96353600-96354400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:96353600-96354400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:96353800-96361000	Weak transcription	Aorta	Aorta
13	chr4:96354000-96354200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:96354000-96355800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:96354000-96359600	Weak transcription	Fetal Kidney	kidney
16	chr4:96354000-96361000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:96354000-96363000	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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