Variant report

Variant	rs4429126
Chromosome Location	chr12:41986397-41986398
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10082993	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10083094	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11181043	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11181044	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11181045	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11181047	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11181048	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11181049	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11615895	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12296608	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12298684	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12310395	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12318860	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12811396	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12813466	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12819302	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1390373	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1495772	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1495779	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35905358	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4351877	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4378453	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4503605	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61940383	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7134158	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7134174	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7968709	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3359948	chr12:41986035-41989833	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41985000-41986400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr12:41985000-41986800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:41986200-41986400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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