Variant report

Variant	rs4429840
Chromosome Location	chr5:148144865-148144866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10078593	0.86[ASN][1000 genomes]
rs10078616	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10080209	0.87[ASN][1000 genomes]
rs10747517	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10747518	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10875640	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11168059	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11168060	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11168061	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11168062	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11747905	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11750926	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12189260	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12517142	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12653443	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12654719	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1368279	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2082397	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2082398	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2163751	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2163752	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2400644	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2400702	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2400703	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2400704	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs246502	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs246503	0.87[ASN][1000 genomes]
rs246504	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2568940	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2569000	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2569001	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs30305	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs30306	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs30307	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs30308	0.84[EUR][1000 genomes]
rs30309	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs30310	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs30311	0.83[EUR][1000 genomes]
rs30312	0.83[EUR][1000 genomes]
rs30313	0.83[EUR][1000 genomes]
rs30314	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs30315	0.83[EUR][1000 genomes]
rs30316	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs30318	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs30320	0.83[EUR][1000 genomes]
rs30321	0.83[EUR][1000 genomes]
rs30323	0.83[EUR][1000 genomes]
rs30324	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs30329	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3097815	0.81[EUR][1000 genomes]
rs4513680	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705261	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705262	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705263	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705265	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56043944	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56376672	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59386367	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62388002	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6580579	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580580	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6861953	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6865781	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6867058	0.88[ASN][1000 genomes]
rs6870415	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6870429	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6870766	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6874249	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6879964	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6882470	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6882476	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6883606	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6885216	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6892967	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7702609	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7737439	0.89[ASN][1000 genomes]
rs919723	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs919724	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv462481	chr5:148130138-148172689	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv599946	chr5:148130138-148172689	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148139000-148149200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr5:148141000-148145000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:148143200-148145600	Weak transcription	GM12878-XiMat	blood
4	chr5:148143200-148145800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:148143600-148145800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:148144800-148145800	Enhancers	Monocytes-CD14+_RO01746	blood

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