Variant report

Variant	rs4432638
Chromosome Location	chr3:50938899-50938900
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13065995	0.85[MKK][hapmap]
rs13093289	0.91[MKK][hapmap]
rs34722439	0.92[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1008585	chr3:50936180-50955418	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50938000-50939200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr3:50938200-50939000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:50938200-50939200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:50938200-50939200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr3:50938200-50939200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:50938200-50939200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:50938200-50939200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:50938200-50939200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:50938200-50939200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:50938200-50939400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr3:50938200-50939400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:50938200-50939400	Enhancers	Esophagus	oesophagus
13	chr3:50938400-50939200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr3:50938400-50939200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:50938400-50939200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:50938400-50939200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:50938800-50939000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:50938800-50939000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr3:50938800-50939200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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