Variant report

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10940579	0.81[ASN][1000 genomes]
rs1821211	0.91[YRI][hapmap]
rs1835874	0.83[ASN][1000 genomes]
rs2408855	0.81[AFR][1000 genomes]
rs6868222	0.80[ASW][hapmap];0.94[LWK][hapmap];0.86[MKK][hapmap];0.83[YRI][hapmap]
rs7716711	0.80[AFR][1000 genomes]
rs7717208	0.83[AFR][1000 genomes]
rs7721249	0.80[ASW][hapmap];0.94[LWK][hapmap];0.88[MKK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs7722730	0.91[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Birth weight	23202124	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4432842	DHX29	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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