Variant report

Variant	rs4433442
Chromosome Location	chr1:56288744-56288745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10888944	0.85[ASN][1000 genomes]
rs4244649	0.87[CEU][hapmap]
rs4512692	0.87[CEU][hapmap]
rs4926697	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv1002958	chr1:56278696-56295112	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4433442	ZSWIM1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56280400-56291000	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:56283000-56293000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:56283200-56292400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56286800-56290200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr1:56287800-56290600	Weak transcription	Fetal Kidney	kidney
6	chr1:56287800-56291000	Enhancers	Fetal Intestine Large	intestine
7	chr1:56288000-56290200	Enhancers	Fetal Intestine Small	intestine
8	chr1:56288000-56292000	Enhancers	Fetal Lung	lung
9	chr1:56288400-56289000	Weak transcription	Placenta	Placenta
10	chr1:56288400-56290400	Enhancers	NHDF-Ad	bronchial
11	chr1:56288600-56289400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:56288600-56289600	Enhancers	Fetal Stomach	stomach
13	chr1:56288600-56289800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:56288600-56289800	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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