Variant report

Variant	rs4437022
Chromosome Location	chr20:52432451-52432452
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:57920235..57924333-chr20:52429102..52433738,4	MCF-7	breast:
2	chr20:45989026..45990634-chr20:52430847..52433559,2	MCF-7	breast:
3	chr2:160568775..160570535-chr20:52431319..52433278,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226266	Chromatin interaction
ENSG00000136536	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2097849	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2191395	0.84[AMR][1000 genomes]
rs2215401	0.84[AMR][1000 genomes]
rs2215402	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2215403	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs4809939	0.84[AMR][1000 genomes]
rs4811470	0.86[YRI][hapmap];0.82[AMR][1000 genomes]
rs4811472	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs4811473	0.83[AMR][1000 genomes]
rs4811474	0.83[AMR][1000 genomes]
rs6013805	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6013806	0.91[AMR][1000 genomes]
rs6013808	0.93[ASN][1000 genomes]
rs6022757	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6022758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6022759	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6022760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6022761	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs6022762	0.81[AMR][1000 genomes]
rs6022763	0.82[AMR][1000 genomes]
rs6022764	0.81[AMR][1000 genomes]
rs6022766	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs6022767	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs6022768	0.83[AMR][1000 genomes]
rs6022769	0.83[AMR][1000 genomes]
rs6022771	0.82[AMR][1000 genomes]
rs6022772	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6022773	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6022779	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6022782	0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes]
rs6064007	0.82[ASN][1000 genomes]
rs6064008	0.82[ASN][1000 genomes]
rs6068679	0.82[ASN][1000 genomes]
rs6068680	0.82[ASN][1000 genomes]
rs6091748	1.00[JPT][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
2	nsv834008	chr20:52368660-52533410	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	185 gene(s)	inside rSNPs	diseases
3	nsv834009	chr20:52386050-52590795	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	182 gene(s)	inside rSNPs	diseases
4	nsv1060372	chr20:52409008-52502100	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	122 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52423800-52436200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:52426200-52456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:52426400-52436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr20:52427200-52434600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:52430400-52432800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr20:52430600-52434200	Weak transcription	Fetal Stomach	stomach
7	chr20:52431200-52432800	Enhancers	Primary T cells from cord blood	blood
8	chr20:52431600-52436200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr20:52431600-52439400	Weak transcription	A549	lung
10	chr20:52431800-52432800	Enhancers	GM12878-XiMat	blood
11	chr20:52431800-52435800	Weak transcription	Thymus	Thymus
12	chr20:52431800-52436000	Weak transcription	HepG2	liver
13	chr20:52432000-52433400	Weak transcription	Fetal Lung	lung

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