Variant report

Variant	rs4437954
Chromosome Location	chr10:50292446-50292447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50287416..50289075-chr10:50291865..50294530,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10508911	1.00[JPT][hapmap]
rs10857434	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs11100985	1.00[JPT][hapmap]
rs12098770	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129034	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4393232	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50272600-50294200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:50283200-50298200	Weak transcription	Spleen	Spleen
3	chr10:50288200-50293200	Enhancers	Right Ventricle	heart
4	chr10:50288400-50292600	Enhancers	Brain Anterior Caudate	brain
5	chr10:50288400-50292800	Enhancers	Ovary	ovary
6	chr10:50288400-50293600	Enhancers	HSMMtube	muscle
7	chr10:50289000-50294200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:50289200-50294400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:50289400-50294200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:50289600-50298800	Weak transcription	Fetal Thymus	thymus
11	chr10:50290200-50293000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:50290200-50298200	Weak transcription	Colonic Mucosa	Colon
13	chr10:50290400-50292800	Weak transcription	Fetal Intestine Large	intestine
14	chr10:50290400-50295000	Weak transcription	K562	blood
15	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
16	chr10:50291000-50293400	Genic enhancers	Fetal Muscle Leg	muscle
17	chr10:50291200-50297200	Weak transcription	Lung	lung
18	chr10:50291400-50293400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:50291400-50293800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:50291600-50293800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:50291600-50294200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:50291800-50292600	Enhancers	Brain Cingulate Gyrus	brain
23	chr10:50291800-50293200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:50291800-50299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:50292000-50293400	Genic enhancers	Fetal Muscle Trunk	muscle
26	chr10:50292200-50293000	Bivalent Enhancer	Fetal Lung	lung
27	chr10:50292200-50293000	Weak transcription	Left Ventricle	heart
28	chr10:50292200-50293200	Weak transcription	Adipose Nuclei	Adipose
29	chr10:50292200-50294200	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:50292200-50294400	Weak transcription	Brain Angular Gyrus	brain
31	chr10:50292200-50294400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:50292200-50296400	Weak transcription	Right Atrium	heart
33	chr10:50292200-50296600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
36	chr10:50292400-50292800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:50292400-50292800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:50292400-50292800	Weak transcription	Fetal Stomach	stomach
39	chr10:50292400-50293000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:50292400-50294200	Weak transcription	Brain Hippocampus Middle	brain

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