Variant report

Variant	rs4438222
Chromosome Location	chr14:65624617-65624618
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65619490..65621692-chr14:65623555..65626108,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11624131	0.93[ASN][1000 genomes]
rs12887819	0.93[ASN][1000 genomes]
rs2991529	0.91[ASN][1000 genomes]
rs34936049	0.92[ASN][1000 genomes]
rs35007032	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59334267	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61606779	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65616400-65626200	Weak transcription	Spleen	Spleen
2	chr14:65620000-65625800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:65623200-65625200	Enhancers	Fetal Muscle Trunk	muscle
4	chr14:65623200-65626000	Enhancers	Fetal Muscle Leg	muscle
5	chr14:65623600-65625000	Weak transcription	Gastric	stomach
6	chr14:65623800-65625000	Weak transcription	Lung	lung
7	chr14:65623800-65625200	Weak transcription	NHDF-Ad	bronchial
8	chr14:65623800-65625400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:65623800-65625600	Weak transcription	HSMMtube	muscle
10	chr14:65623800-65626200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:65623800-65626200	Weak transcription	Esophagus	oesophagus
12	chr14:65624000-65625000	Weak transcription	Stomach Mucosa	stomach
13	chr14:65624000-65625200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:65624000-65625200	Weak transcription	HSMM	muscle
15	chr14:65624000-65625600	Weak transcription	Hela-S3	cervix
16	chr14:65624000-65625800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr14:65624000-65625800	Enhancers	GM12878-XiMat	blood
18	chr14:65624000-65626200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr14:65624000-65637000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:65624000-65637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:65624200-65625000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:65624600-65625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:65624600-65627200	Weak transcription	Placenta Amnion	Placenta Amnion

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