Variant report

Variant	rs4439435
Chromosome Location	chr10:117901197-117901198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117840481..117842796-chr10:117899990..117902593,2	MCF-7	breast:
2	chr10:117893470..117897343-chr10:117899899..117904447,5	MCF-7	breast:
3	chr10:117896908..117906858-chr10:118026245..118033933,19	MCF-7	breast:
4	chr10:117900819..117902963-chr10:117914849..117917346,2	MCF-7	breast:
5	chr10:117900022..117903486-chr10:117940842..117944873,4	MCF-7	breast:
6	chr10:117900277..117904183-chr10:118030891..118034394,3	MCF-7	breast:
7	chr10:117900756..117903776-chr10:118021807..118024348,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4237495	0.90[AFR][1000 genomes]
rs4545453	0.81[AFR][1000 genomes]
rs4556460	0.81[AFR][1000 genomes]
rs4751952	0.90[AFR][1000 genomes]
rs4751954	0.90[AFR][1000 genomes]
rs74160636	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74160637	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117893000-117903000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:117894000-117907200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:117895200-117902200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:117899200-117903000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:117901000-117901200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:117901000-117901200	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links