Variant report

Variant	rs4439757
Chromosome Location	chr16:81938677-81938678
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81933931..81936851-chr16:81937531..81942910,6	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1143689	0.84[AMR][1000 genomes]
rs4243220	0.85[ASN][1000 genomes]
rs4264387	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4305012	0.85[ASN][1000 genomes]
rs4424903	0.85[ASN][1000 genomes]
rs4435248	0.81[AMR][1000 genomes]
rs4510005	0.84[AMR][1000 genomes]
rs4520827	0.85[ASN][1000 genomes]
rs4587968	0.86[AMR][1000 genomes]
rs4888185	0.85[ASN][1000 genomes]
rs4889435	0.85[ASN][1000 genomes]
rs4889436	0.85[ASN][1000 genomes]
rs4889437	0.85[ASN][1000 genomes]
rs4889438	0.85[ASN][1000 genomes]
rs6564935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6564936	0.94[EUR][1000 genomes]
rs7190729	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1065088	chr16:81878481-81953248	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81902800-81955600	Weak transcription	Fetal Kidney	kidney
2	chr16:81905800-81943000	Weak transcription	Small Intestine	intestine
3	chr16:81908400-81950000	Strong transcription	GM12878-XiMat	blood
4	chr16:81908400-81950200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr16:81909400-81961800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr16:81920400-81982000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr16:81922400-81944800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr16:81924400-81938800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr16:81924400-81942400	Strong transcription	Duodenum Mucosa	Duodenum
10	chr16:81924400-81946200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr16:81924400-81961600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr16:81924400-81970000	Weak transcription	Fetal Intestine Large	intestine
13	chr16:81924800-81949200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr16:81925400-81949200	Weak transcription	Right Ventricle	heart
15	chr16:81925800-81992600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr16:81926200-81942600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr16:81928000-81953200	Weak transcription	Fetal Thymus	thymus
18	chr16:81930800-81953400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr16:81931000-81949800	Strong transcription	Liver	Liver
20	chr16:81933000-81983600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr16:81934600-81961200	Weak transcription	Colonic Mucosa	Colon
22	chr16:81934800-81938800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr16:81934800-81939400	Strong transcription	Spleen	Spleen
24	chr16:81934800-81945000	Weak transcription	Thymus	Thymus
25	chr16:81934800-81971600	Weak transcription	Right Atrium	heart
26	chr16:81935000-81953000	Weak transcription	Adipose Nuclei	Adipose
27	chr16:81935200-81941800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr16:81936000-81941200	Weak transcription	Fetal Stomach	stomach
29	chr16:81936000-81943400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr16:81936000-81982000	Weak transcription	Gastric	stomach
31	chr16:81936000-81984600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr16:81936200-81939000	Strong transcription	Primary hematopoietic stem cells	blood
33	chr16:81936400-81949400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr16:81936600-81944800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr16:81936800-81949400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr16:81936800-81951000	Strong transcription	Primary B cells from cord blood	blood
37	chr16:81937000-81969800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr16:81937200-81955000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr16:81937400-81941400	Weak transcription	Placenta	Placenta
40	chr16:81937600-81941600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr16:81938200-81938800	Weak transcription	Fetal Intestine Small	intestine
42	chr16:81938200-81946200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr16:81938400-81941200	Weak transcription	Lung	lung
44	chr16:81938600-81946400	Weak transcription	Pancreas	Pancrea

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