Variant report

Variant	rs4440155
Chromosome Location	chr3:54191334-54191335
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:54189308..54191991-chr3:54198371..54200149,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11130398	0.83[ASN][1000 genomes]
rs11713312	0.80[ASN][1000 genomes]
rs11719463	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11719497	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11914927	0.84[ASN][1000 genomes]
rs11917010	0.83[ASN][1000 genomes]
rs11926147	0.84[ASN][1000 genomes]
rs12635465	0.83[ASN][1000 genomes]
rs1530734	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28613537	0.84[ASN][1000 genomes]
rs4077945	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4927999	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4928000	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4928002	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4928005	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56349750	0.83[ASN][1000 genomes]
rs59072955	0.83[ASN][1000 genomes]
rs6445629	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6764560	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6797113	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6799361	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6803515	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085924	0.83[ASN][1000 genomes]
rs73085925	0.82[ASN][1000 genomes]
rs7653627	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9311525	0.84[EUR][1000 genomes]
rs9809321	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9846298	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9883488	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1006990	chr3:53849510-54285212	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3433663	chr3:54191275-54191840	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54181000-54195000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:54181600-54192000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:54188800-54192000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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