Variant report

Variant	rs4443159
Chromosome Location	chr1:76298958-76298959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11916660	1.00[ASN][1000 genomes]
rs11926907	1.00[ASN][1000 genomes]
rs13317572	1.00[ASN][1000 genomes]
rs13321576	1.00[ASN][1000 genomes]
rs13327437	1.00[ASN][1000 genomes]
rs1385187	1.00[ASN][1000 genomes]
rs17042700	1.00[ASN][1000 genomes]
rs2252871	1.00[ASN][1000 genomes]
rs2729148	1.00[ASN][1000 genomes]
rs2729186	1.00[ASN][1000 genomes]
rs2729207	1.00[ASN][1000 genomes]
rs2729209	1.00[ASN][1000 genomes]
rs2729225	1.00[ASN][1000 genomes]
rs2729243	1.00[ASN][1000 genomes]
rs2729246	1.00[ASN][1000 genomes]
rs2729247	1.00[ASN][1000 genomes]
rs2729249	1.00[ASN][1000 genomes]
rs2729250	1.00[ASN][1000 genomes]
rs2729252	1.00[ASN][1000 genomes]
rs2729255	1.00[ASN][1000 genomes]
rs2729257	1.00[ASN][1000 genomes]
rs2729258	1.00[ASN][1000 genomes]
rs2729259	1.00[ASN][1000 genomes]
rs5012349	1.00[ASN][1000 genomes]
rs62236818	1.00[ASN][1000 genomes]
rs62236820	1.00[ASN][1000 genomes]
rs62236821	1.00[ASN][1000 genomes]
rs62236822	1.00[ASN][1000 genomes]
rs62236824	1.00[ASN][1000 genomes]
rs62236825	1.00[ASN][1000 genomes]
rs62236826	1.00[ASN][1000 genomes]
rs62236827	1.00[ASN][1000 genomes]
rs62236828	1.00[ASN][1000 genomes]
rs62236829	1.00[ASN][1000 genomes]
rs62236830	1.00[ASN][1000 genomes]
rs62236831	1.00[ASN][1000 genomes]
rs62236833	1.00[ASN][1000 genomes]
rs62236834	1.00[ASN][1000 genomes]
rs6764684	1.00[ASN][1000 genomes]
rs6798543	1.00[ASN][1000 genomes]
rs73092899	1.00[ASN][1000 genomes]
rs7641376	1.00[ASN][1000 genomes]
rs9284905	0.83[ASN][1000 genomes]
rs9311475	1.00[ASN][1000 genomes]
rs9311476	1.00[ASN][1000 genomes]
rs9311534	1.00[ASN][1000 genomes]
rs9816725	1.00[ASN][1000 genomes]
rs9824721	1.00[ASN][1000 genomes]
rs9825213	1.00[ASN][1000 genomes]
rs9830837	1.00[ASN][1000 genomes]
rs9832874	1.00[ASN][1000 genomes]
rs9835014	1.00[ASN][1000 genomes]
rs9837987	1.00[ASN][1000 genomes]
rs9855240	1.00[ASN][1000 genomes]
rs9858057	1.00[ASN][1000 genomes]
rs9858182	1.00[ASN][1000 genomes]
rs9858514	1.00[ASN][1000 genomes]
rs9863053	1.00[ASN][1000 genomes]
rs9873368	1.00[ASN][1000 genomes]
rs9878845	1.00[ASN][1000 genomes]
rs9882746	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1800125	chr1:76269439-76379497	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1799260	chr1:76269439-76383297	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1847721	chr1:76269439-76383565	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1466	chr1:76280957-76299478	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76295800-76307800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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