Variant report

Variant	rs4443279
Chromosome Location	chr4:20321977-20321978
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12641426	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13142886	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs1323062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323067	0.85[CEU][hapmap]
rs13434430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1815266	0.80[EUR][1000 genomes]
rs1923839	0.82[CEU][hapmap]
rs7664347	0.81[CEU][hapmap]
rs9993087	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593793	chr4:20282334-20333722	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878740	chr4:20292239-20333722	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20306200-20325600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:20315600-20325600	Weak transcription	Lung	lung
3	chr4:20315600-20328000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:20317000-20322200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr4:20317000-20323400	Enhancers	Brain Hippocampus Middle	brain
6	chr4:20319000-20322000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:20319000-20323200	Enhancers	Brain Substantia Nigra	brain
8	chr4:20319200-20323200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:20319600-20322000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:20319600-20327600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:20320200-20322400	Enhancers	NHLF	lung
12	chr4:20320200-20334000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:20320400-20322000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:20320600-20322000	Weak transcription	NHDF-Ad	bronchial
15	chr4:20320600-20323600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:20320600-20327400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:20320800-20322400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:20320800-20323600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:20320800-20326600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:20321400-20322600	Enhancers	Brain Angular Gyrus	brain
21	chr4:20321400-20322600	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:20321600-20322400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr4:20321600-20327400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:20321800-20322000	Enhancers	Brain Anterior Caudate	brain
25	chr4:20321800-20322000	Bivalent/Poised TSS	Fetal Brain Male	brain
26	chr4:20321800-20322000	Enhancers	Fetal Lung	lung
27	chr4:20321800-20322200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:20321800-20322200	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr4:20321800-20322400	Enhancers	Rectal Smooth Muscle	rectum
30	chr4:20321800-20327800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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