Variant report

Variant	rs4443280
Chromosome Location	chr4:20490667-20490668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:20483512..20485681-chr4:20488702..20490810,2	K562	blood:
2	chr4:20488243..20490673-chr4:20492136..20494455,3	K562	blood:
3	chr4:20484129..20486943-chr4:20489263..20491359,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13104018	0.86[AFR][1000 genomes]
rs13110908	0.87[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13145991	1.00[EUR][1000 genomes]
rs13152661	0.86[AFR][1000 genomes]
rs35438820	0.87[EUR][1000 genomes]
rs35470020	0.91[EUR][1000 genomes]
rs36000259	1.00[EUR][1000 genomes]
rs3775808	0.91[EUR][1000 genomes]
rs71607026	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878742	chr4:20473799-20527864	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20464600-20532600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:20465000-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:20466800-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:20480200-20493400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:20484800-20495200	Weak transcription	NHLF	lung
6	chr4:20485400-20491800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:20486000-20491200	Strong transcription	Fetal Lung	lung
8	chr4:20488200-20491200	Weak transcription	Fetal Intestine Small	intestine
9	chr4:20488200-20493000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:20489200-20529600	Weak transcription	Fetal Stomach	stomach
11	chr4:20489600-20495000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:20489800-20493400	Weak transcription	NHDF-Ad	bronchial
13	chr4:20489800-20494600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:20489800-20525400	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:20490000-20490800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:20490000-20491800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:20490000-20495200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:20490000-20496600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:20490400-20490800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:20490400-20495600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:20490600-20493800	Strong transcription	Osteobl	bone

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