Variant report

Variant	rs444769
Chromosome Location	chr2:35033388-35033389
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10166190	1.00[AMR][1000 genomes]
rs10172015	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10181402	1.00[AMR][1000 genomes]
rs10192097	1.00[EUR][1000 genomes]
rs1405815	1.00[EUR][1000 genomes]
rs1880489	1.00[EUR][1000 genomes]
rs2030938	1.00[EUR][1000 genomes]
rs2438430	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs280685	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs280704	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs280705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs280706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs280708	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs280712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs280716	1.00[AMR][1000 genomes]
rs280718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs280723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs280725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421359	1.00[AMR][1000 genomes]
rs28477119	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs366847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs374556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs377717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs381438	1.00[EUR][1000 genomes]
rs386342	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs416752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs432333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs435022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59053553	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6707852	1.00[EUR][1000 genomes]
rs7600503	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873804	chr2:34156867-35047107	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv873810	chr2:34456200-35047107	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv873821	chr2:34738616-35416075	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1003361	chr2:34746445-35202302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv873825	chr2:34892832-35115848	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1003322	chr2:34898412-35216795	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010863	chr2:34922329-35052108	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
8	nsv1002915	chr2:34923003-35052108	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
9	nsv873830	chr2:34972791-35047107	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
10	nsv524038	chr2:34990937-35073607	Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv3423972	chr2:35012350-35034951	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	n/a
12	nsv873831	chr2:35013851-35092762	ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv873832	chr2:35013851-35095373	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv516219	chr2:35022419-35033996	Weak transcription Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
15	nsv873833	chr2:35022419-35115848	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv1837864	chr2:35030699-35115979	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:35021200-35035400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:35029600-35046600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:35032600-35033800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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