Variant report

Variant	rs4449421
Chromosome Location	chr4:106892210-106892211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106887456..106889900-chr4:106890569..106892940,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10010622	1.00[YRI][hapmap]
rs10010712	1.00[YRI][hapmap]
rs10023586	1.00[YRI][hapmap]
rs62320062	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7679603	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3408864	chr4:106892181-106892259	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106885400-106909800	Weak transcription	Aorta	Aorta
2	chr4:106885600-106894000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:106886600-106894600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:106888600-106893800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106888600-106894000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:106888800-106893600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:106888800-106894200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:106889200-106893600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:106889200-106893600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:106889200-106893600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:106889200-106893800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:106889200-106894000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:106889400-106893800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:106889400-106894000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:106890400-106893800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:106890600-106894200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:106890600-106894200	Weak transcription	Pancreas	Pancrea
18	chr4:106891000-106893800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:106891000-106898600	Weak transcription	Fetal Intestine Large	intestine
20	chr4:106891400-106895400	Weak transcription	Psoas Muscle	Psoas
21	chr4:106891600-106893200	Enhancers	Fetal Intestine Small	intestine
22	chr4:106891800-106897800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:106892000-106892400	Enhancers	HSMMtube	muscle
24	chr4:106892200-106892600	Enhancers	K562	blood
25	chr4:106892200-106892800	Enhancers	Rectal Mucosa Donor 31	rectum

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