Variant report

Variant	rs4449689
Chromosome Location	chr7:40431968-40431969
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10237675	0.90[YRI][hapmap]
rs10259977	0.92[ASW][hapmap];0.93[LWK][hapmap];0.95[YRI][hapmap]
rs10273987	0.85[MKK][hapmap];0.95[YRI][hapmap]
rs10807903	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11771463	0.95[YRI][hapmap];0.95[AFR][1000 genomes]
rs11773518	0.95[YRI][hapmap]
rs13232967	0.84[YRI][hapmap]
rs1393439	0.92[ASW][hapmap];0.93[LWK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs1393440	0.92[ASW][hapmap];0.93[LWK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs1393441	0.92[AFR][1000 genomes]
rs1393442	0.85[MKK][hapmap];0.95[YRI][hapmap]
rs2422301	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs4134202	0.92[ASW][hapmap];0.82[LWK][hapmap]
rs4386872	0.92[ASW][hapmap];0.93[LWK][hapmap];0.95[YRI][hapmap]
rs4392801	0.89[YRI][hapmap]
rs4521659	0.95[YRI][hapmap]
rs4560709	0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs4562217	0.92[ASW][hapmap];0.93[LWK][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs4566947	0.95[YRI][hapmap]
rs4571646	1.00[YRI][hapmap]
rs4723953	0.84[YRI][hapmap]
rs4723963	0.85[MKK][hapmap];0.90[YRI][hapmap]
rs6462981	0.92[AFR][1000 genomes]
rs6966371	0.85[MKK][hapmap];0.84[YRI][hapmap]
rs6973720	0.95[YRI][hapmap]
rs6977218	0.90[YRI][hapmap]
rs7787193	0.84[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887985	chr7:40265510-40586674	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817404	chr7:40295934-40573605	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv949540	chr7:40321357-40528147	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv34484	chr7:40383159-40489083	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2757223	chr7:40384030-40497278	Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2759526	chr7:40384030-40497278	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv8081	chr7:40393228-40486239	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1016800	chr7:40409214-40470294	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1015701	chr7:40409214-40474936	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv830969	chr7:40422576-40582389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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