Variant report

Variant	rs4456279
Chromosome Location	chr11:72520003-72520004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72490003..72493146-chr11:72517382..72520006,3	MCF-7	breast:
2	chr11:72492462..72497657-chr11:72516584..72520284,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265064	Chromatin interaction
ENSG00000214530	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10898872	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11235595	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235597	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1126205	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3765638	0.87[ASN][1000 genomes]
rs577217	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61894194	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv825992	chr11:72476174-72524295	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72505600-72523600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:72505800-72520200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:72505800-72523000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:72505800-72523600	Weak transcription	Stomach Mucosa	stomach
5	chr11:72506000-72520200	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:72506000-72521800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:72506000-72522800	Weak transcription	Pancreas	Pancrea
8	chr11:72506000-72523200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:72506000-72523600	Weak transcription	Brain Angular Gyrus	brain
10	chr11:72506000-72523800	Weak transcription	Spleen	Spleen
11	chr11:72506200-72523800	Weak transcription	Brain Anterior Caudate	brain
12	chr11:72506600-72520200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:72509800-72523800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:72509800-72523800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:72510000-72520200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:72510000-72521600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:72510000-72521600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:72510000-72523600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:72510000-72523600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:72510000-72523800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:72510000-72523800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:72510200-72523800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:72510400-72520200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:72510400-72523800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:72512800-72520200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:72513000-72523600	Weak transcription	Thymus	Thymus
27	chr11:72513800-72523800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:72515000-72520200	Weak transcription	Gastric	stomach
29	chr11:72515000-72523200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:72515000-72523600	Weak transcription	Right Ventricle	heart
31	chr11:72515600-72523000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr11:72515800-72523200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:72516200-72522800	Weak transcription	Left Ventricle	heart
34	chr11:72516400-72520200	Weak transcription	Fetal Intestine Large	intestine
35	chr11:72516400-72523600	Weak transcription	Esophagus	oesophagus
36	chr11:72516600-72522600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:72516800-72523000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:72516800-72523200	Weak transcription	Fetal Thymus	thymus
39	chr11:72517200-72523600	Weak transcription	Right Atrium	heart
40	chr11:72517200-72523800	Weak transcription	Aorta	Aorta
41	chr11:72517400-72523200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:72517600-72520200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr11:72517600-72520200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:72517800-72520200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:72517800-72523200	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:72517800-72523600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:72517800-72523600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:72518000-72523600	Weak transcription	Fetal Lung	lung
49	chr11:72518200-72520200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:72518200-72523000	Weak transcription	Duodenum Mucosa	Duodenum

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