Variant report

Variant	rs4456980
Chromosome Location	chr4:121936116-121936117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11931955	0.94[EUR][1000 genomes]
rs11945593	0.94[EUR][1000 genomes]
rs11946567	0.94[EUR][1000 genomes]
rs13108974	0.95[EUR][1000 genomes]
rs13123781	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1397645	0.93[EUR][1000 genomes]
rs1397646	0.90[EUR][1000 genomes]
rs2136949	0.92[EUR][1000 genomes]
rs3775913	0.93[EUR][1000 genomes]
rs4605682	0.94[EUR][1000 genomes]
rs56242650	0.94[EUR][1000 genomes]
rs58294830	0.94[EUR][1000 genomes]
rs58510164	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690446	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121928600-121936400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr4:121933200-121938600	Enhancers	Fetal Intestine Large	intestine
3	chr4:121933800-121938400	Enhancers	Fetal Intestine Small	intestine
4	chr4:121935400-121936200	Enhancers	Fetal Heart	heart
5	chr4:121935400-121936400	Enhancers	Primary T cells from cord blood	blood
6	chr4:121935400-121936400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr4:121935600-121936200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:121935800-121936400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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