Variant report

Variant	rs4457010
Chromosome Location	chr4:54631772-54631773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54631461..54634039-chr4:54637339..54639127,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2412493	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2590767	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62297703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62297705	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62297727	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv527672	chr4:54626228-54637201	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54629200-54631800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:54629200-54634400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:54629400-54631800	Enhancers	Ovary	ovary
4	chr4:54629400-54633800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:54629600-54631800	Enhancers	HSMM	muscle
6	chr4:54629600-54631800	Enhancers	NH-A	brain
7	chr4:54629600-54632000	Enhancers	Fetal Stomach	stomach
8	chr4:54630000-54631800	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr4:54630200-54632200	Enhancers	Fetal Kidney	kidney
10	chr4:54630400-54632000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:54630600-54632400	Weak transcription	HMEC	breast
12	chr4:54630800-54634000	Enhancers	NHLF	lung
13	chr4:54630800-54635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:54630800-54635800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:54631000-54631800	Enhancers	Liver	Liver
16	chr4:54631000-54632000	Enhancers	GM12878-XiMat	blood
17	chr4:54631000-54633000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:54631000-54635800	Enhancers	Osteobl	bone
19	chr4:54631200-54631800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:54631200-54631800	Flanking Active TSS	NHDF-Ad	bronchial
21	chr4:54631200-54632000	Enhancers	Primary B cells from peripheral blood	blood
22	chr4:54631400-54631800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:54631600-54631800	Flanking Active TSS	Fetal Lung	lung
24	chr4:54631600-54631800	Enhancers	Placenta	Placenta
25	chr4:54631600-54633400	Weak transcription	HSMMtube	muscle
26	chr4:54631600-54636200	Weak transcription	Colon Smooth Muscle	Colon

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