Variant report

Variant	rs445747
Chromosome Location	chr5:106896363-106896364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106895105..106896726-chr5:106898607..106901485,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs163727	0.85[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs164699	0.91[CHB][hapmap]
rs164844	0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs164846	0.82[ASN][1000 genomes]
rs164848	0.84[ASN][1000 genomes]
rs168501	0.84[ASN][1000 genomes]
rs2161514	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2445074	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs2457867	0.89[ASN][1000 genomes]
rs2484103	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs341272	0.87[CHB][hapmap]
rs341274	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs342603	0.87[CHB][hapmap]
rs342604	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs352609	0.83[CHB][hapmap]
rs354182	0.84[ASN][1000 genomes]
rs41375	0.87[CHB][hapmap]
rs459400	0.87[CHB][hapmap]
rs459637	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs464950	0.87[CHB][hapmap]
rs467089	0.87[CHB][hapmap]
rs553363	0.85[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs555989	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs662627	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs677797	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106879000-106899200	Weak transcription	Fetal Stomach	stomach
2	chr5:106881600-106899600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:106884600-106896400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:106885600-106896400	Weak transcription	Right Atrium	heart
5	chr5:106887200-106899400	Weak transcription	Fetal Lung	lung
6	chr5:106887200-106906800	Weak transcription	Right Ventricle	heart
7	chr5:106889400-106903000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:106890000-106898000	Enhancers	Fetal Heart	heart
9	chr5:106890200-106900800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:106891000-106899800	Weak transcription	Aorta	Aorta
11	chr5:106892000-106901800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:106892800-106899800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:106893000-106896400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:106893200-106901800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:106893400-106901600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:106893600-106898200	Enhancers	A549	lung
17	chr5:106893800-106906000	Weak transcription	NHDF-Ad	bronchial
18	chr5:106894000-106902000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:106894800-106900000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:106895000-106897600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:106895000-106899200	Weak transcription	Left Ventricle	heart
22	chr5:106895000-106899400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr5:106895000-106899600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:106895000-106901600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:106895000-106901600	Weak transcription	HMEC	breast
26	chr5:106895000-106901800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:106895000-106906800	Weak transcription	Lung	lung
28	chr5:106895200-106899400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:106895200-106899600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:106895200-106899600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr5:106895400-106896400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr5:106895400-106897600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:106895400-106899400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr5:106895600-106896400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:106895600-106899600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:106895600-106899600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr5:106895800-106897800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr5:106895800-106899600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr5:106896200-106896600	Enhancers	H1 Cell Line	embryonic stem cell
40	chr5:106896200-106897000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:106896200-106897000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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