Variant report

Variant	rs4458560
Chromosome Location	chr5:112463078-112463079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112455253..112458185-chr5:112461323..112464102,2	MCF-7	breast:
2	chr5:112459886..112461931-chr5:112462862..112464863,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11952087	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11955830	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs35555142	0.83[EUR][1000 genomes]
rs4235792	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4259163	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4454046	0.89[ASW][hapmap];0.91[LWK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4527591	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4582268	1.00[EUR][1000 genomes]
rs4705541	0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705781	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60681208	0.83[EUR][1000 genomes]
rs62373350	0.83[EUR][1000 genomes]
rs62373352	0.83[EUR][1000 genomes]
rs62374676	0.83[EUR][1000 genomes]
rs62374682	0.83[EUR][1000 genomes]
rs62374707	0.83[EUR][1000 genomes]
rs62374708	1.00[EUR][1000 genomes]
rs62374709	1.00[EUR][1000 genomes]
rs62374711	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6594684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6594688	0.92[AFR][1000 genomes]
rs6594689	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6872711	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73237129	1.00[EUR][1000 genomes]
rs7703001	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112451000-112478800	Weak transcription	Aorta	Aorta
2	chr5:112456600-112467200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:112458400-112474200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:112458600-112474000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:112458600-112477000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:112458800-112476600	Weak transcription	NHEK	skin
7	chr5:112459400-112468400	Weak transcription	NHDF-Ad	bronchial
8	chr5:112460600-112463600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:112460600-112465000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:112460800-112464600	Weak transcription	Psoas Muscle	Psoas
11	chr5:112460800-112466800	Weak transcription	Fetal Brain Male	brain
12	chr5:112460800-112467400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:112461000-112466600	Weak transcription	Right Atrium	heart
14	chr5:112461200-112469400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:112461400-112466200	Weak transcription	Left Ventricle	heart
16	chr5:112461400-112466600	Weak transcription	Right Ventricle	heart
17	chr5:112461400-112468400	Weak transcription	Ovary	ovary
18	chr5:112461400-112476800	Weak transcription	Fetal Muscle Leg	muscle
19	chr5:112461600-112464000	Weak transcription	Fetal Brain Female	brain
20	chr5:112461800-112463600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:112461800-112463800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:112461800-112476200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:112462000-112467400	Weak transcription	Adipose Nuclei	Adipose
24	chr5:112462200-112463600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:112462200-112463600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr5:112462200-112463600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr5:112462200-112464000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:112462200-112466600	Weak transcription	Fetal Heart	heart
29	chr5:112462200-112475600	Weak transcription	Liver	Liver
30	chr5:112462400-112463600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr5:112462400-112464800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:112462400-112465200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:112462400-112466200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr5:112462600-112476200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr5:112462800-112465200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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