Variant report

Variant	rs4459399
Chromosome Location	chr12:32076095-32076096
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10431224	0.81[AFR][1000 genomes]
rs10844055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844056	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051670	0.85[ASN][1000 genomes]
rs11051675	0.88[AFR][1000 genomes]
rs11051676	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11051677	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051678	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051680	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051683	0.80[ASN][1000 genomes]
rs1150981	0.87[ASN][1000 genomes]
rs1150984	0.83[ASN][1000 genomes]
rs1150985	0.83[ASN][1000 genomes]
rs1150986	0.83[ASN][1000 genomes]
rs1150987	0.83[ASN][1000 genomes]
rs1150988	0.83[ASN][1000 genomes]
rs1150989	0.85[ASN][1000 genomes]
rs1150994	0.85[ASN][1000 genomes]
rs1150995	0.85[ASN][1000 genomes]
rs1150996	0.85[ASN][1000 genomes]
rs11612197	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12370029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12424379	0.88[AFR][1000 genomes]
rs12426610	0.88[AFR][1000 genomes]
rs1259769	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1259770	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1259771	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1259772	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1259773	0.91[ASN][1000 genomes]
rs1259774	0.89[ASN][1000 genomes]
rs1259775	0.87[ASN][1000 genomes]
rs1259874	0.87[ASN][1000 genomes]
rs1259885	0.85[ASN][1000 genomes]
rs1259886	0.85[ASN][1000 genomes]
rs1270226	0.93[ASN][1000 genomes]
rs12813680	0.93[ASN][1000 genomes]
rs1666188	0.99[ASN][1000 genomes]
rs1666189	0.99[ASN][1000 genomes]
rs1666242	0.87[ASN][1000 genomes]
rs1666243	0.87[ASN][1000 genomes]
rs1779730	0.85[ASN][1000 genomes]
rs1779731	0.83[ASN][1000 genomes]
rs1779734	0.82[ASN][1000 genomes]
rs1797804	0.84[ASN][1000 genomes]
rs1797809	0.84[ASN][1000 genomes]
rs1797810	0.84[ASN][1000 genomes]
rs1797811	0.84[ASN][1000 genomes]
rs2068919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263213	0.99[ASN][1000 genomes]
rs2594067	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2625128	0.93[ASN][1000 genomes]
rs2799967	0.85[ASN][1000 genomes]
rs2799968	0.85[ASN][1000 genomes]
rs2799969	0.81[ASN][1000 genomes]
rs2799971	0.84[ASN][1000 genomes]
rs35854314	0.94[ASN][1000 genomes]
rs4362220	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4376992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57011786	0.88[AFR][1000 genomes]
rs7295331	0.88[AFR][1000 genomes]
rs7342308	0.87[AFR][1000 genomes]
rs7342312	0.88[AFR][1000 genomes]
rs7342340	0.88[AFR][1000 genomes]
rs7342346	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342378	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043010	chr12:31798446-32143151	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv541446	chr12:31798446-32143151	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3432694	chr12:31801467-32109828	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv558100	chr12:31866833-32185924	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1045464	chr12:31869888-32183792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv541447	chr12:31869888-32183792	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
8	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	nsv541448	chr12:31989478-32079094	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv2751088	chr12:31998994-32081433	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv2751089	chr12:31999647-32076736	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1054732	chr12:32002284-32081411	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv469332	chr12:32004170-32094101	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv558149	chr12:32004170-32094101	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv541453	chr12:32008392-32079094	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	esv2751092	chr12:32013095-32076768	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	esv2751093	chr12:32013095-32076768	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	esv2751094	chr12:32013095-32076823	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	esv2751095	chr12:32013095-32076823	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	esv2752622	chr12:32013095-32076823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv430499	chr12:32013095-32076823	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
23	esv3395699	chr12:32056734-32082218	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv3449757	chr12:32067390-32076433	ZNF genes & repeats Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32074400-32077000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:32074800-32076400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:32074800-32077200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr12:32075000-32076800	ZNF genes & repeats	Dnd41	blood
5	chr12:32075200-32076800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:32075200-32076800	ZNF genes & repeats	Liver	Liver
7	chr12:32075400-32076200	ZNF genes & repeats	Colonic Mucosa	Colon
8	chr12:32075400-32076400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr12:32075400-32076800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
10	chr12:32075600-32076600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:32075600-32076600	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr12:32075600-32076800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
13	chr12:32076000-32076600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
14	chr12:32076000-32077000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links