Variant report

Variant	rs4459872
Chromosome Location	chr3:134009884-134009885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11922449	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922472	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630508	0.95[ASN][1000 genomes]
rs12637259	0.92[EUR][1000 genomes]
rs12695607	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695608	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4461395	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72986487	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9858570	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869876	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134007600-134010400	Weak transcription	Colonic Mucosa	Colon
2	chr3:134008200-134011000	Enhancers	Fetal Lung	lung
3	chr3:134008800-134010600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:134009600-134011000	Enhancers	Fetal Stomach	stomach
5	chr3:134009800-134010200	Enhancers	Stomach Smooth Muscle	stomach
6	chr3:134009800-134010400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:134009800-134010600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:134009800-134010600	Enhancers	Colon Smooth Muscle	Colon
9	chr3:134009800-134010600	Enhancers	Ovary	ovary
10	chr3:134009800-134010800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:134009800-134010800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:134009800-134010800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:134009800-134010800	Enhancers	Hela-S3	cervix
14	chr3:134009800-134011000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:134009800-134011000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:134009800-134011000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:134009800-134011000	Enhancers	Fetal Heart	heart
18	chr3:134009800-134011000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:134009800-134011200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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