Variant report

Variant	rs4460336
Chromosome Location	chr8:11422894-11422895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11379820..11382247-chr8:11420170..11422972,2	MCF-7	breast:
2	chr8:11422187..11423813-chr8:11429710..11432078,2	MCF-7	breast:
3	chr8:11422237..11424811-chr8:11602615..11604781,2	MCF-7	breast:
4	chr8:11422289..11424857-chr8:11598109..11600598,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv520117	chr8:11391650-11429147	Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv465466	chr8:11391650-11429147	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv610289	chr8:11391650-11429147	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv465467	chr8:11391650-11430485	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv610290	chr8:11391650-11430485	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv2761407	chr8:11392880-11429147	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1029589	chr8:11392880-11429147	ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1026837	chr8:11394466-11464127	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1018959	chr8:11395232-11455756	Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv890358	chr8:11396856-11448738	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1033629	chr8:11401789-11466745	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv523827	chr8:11408401-11486220	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv1032195	chr8:11420541-11480692	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	nsv1016749	chr8:11422571-11466745	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11421400-11423000	Bivalent Enhancer	Esophagus	oesophagus
2	chr8:11421400-11423000	Enhancers	Fetal Heart	heart
3	chr8:11421800-11423000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
4	chr8:11421800-11423000	Bivalent Enhancer	Stomach Mucosa	stomach
5	chr8:11422200-11423000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
6	chr8:11422200-11423000	Enhancers	Gastric	stomach
7	chr8:11422200-11423000	Enhancers	Left Ventricle	heart
8	chr8:11422200-11423000	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
9	chr8:11422200-11423000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
10	chr8:11422200-11423200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:11422200-11423200	Enhancers	Right Ventricle	heart
12	chr8:11422200-11423200	Enhancers	GM12878-XiMat	blood
13	chr8:11422200-11423400	Bivalent Enhancer	Fetal Thymus	thymus
14	chr8:11422200-11423800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:11422200-11423800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:11422400-11423000	Flanking Bivalent TSS/Enh	HepG2	liver
17	chr8:11422400-11423400	Enhancers	Primary B cells from cord blood	blood
18	chr8:11422400-11424600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:11422600-11423000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:11422600-11423000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:11422600-11423000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:11422600-11423000	Bivalent Enhancer	Colon Smooth Muscle	Colon
23	chr8:11422600-11423000	Bivalent Enhancer	Fetal Intestine Small	intestine
24	chr8:11422600-11423000	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr8:11422600-11423200	Genic enhancers	Primary B cells from peripheral blood	blood
26	chr8:11422600-11423200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr8:11422600-11423200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
28	chr8:11422600-11423400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:11422600-11423600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
30	chr8:11422600-11423800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:11422600-11424800	Weak transcription	Ovary	ovary
32	chr8:11422600-11424800	Weak transcription	HSMM	muscle
33	chr8:11422600-11424800	Weak transcription	HSMMtube	muscle
34	chr8:11422600-11425200	Enhancers	HMEC	breast
35	chr8:11422600-11429600	Weak transcription	Right Atrium	heart
36	chr8:11422800-11423000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:11422800-11423000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
38	chr8:11422800-11423200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
39	chr8:11422800-11423200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
40	chr8:11422800-11423200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
41	chr8:11422800-11423200	Enhancers	Hela-S3	cervix
42	chr8:11422800-11423400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr8:11422800-11423600	Weak transcription	HUVEC	blood vessel
44	chr8:11422800-11423800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr8:11422800-11425000	Enhancers	A549	lung
46	chr8:11422800-11429000	Weak transcription	Pancreas	Pancrea

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