Variant report

Variant	rs4461714
Chromosome Location	chr6:63614229-63614230
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10806036	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10806045	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10943247	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10943256	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10943265	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10943266	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10943281	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10943283	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10943284	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10943285	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10943289	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10943290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943291	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189713	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12191496	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12192467	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12193339	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12193462	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12194576	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12194828	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12195027	0.83[EUR][1000 genomes]
rs12198195	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12199023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12199137	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12199634	0.83[EUR][1000 genomes]
rs12200709	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12200951	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12201216	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12202151	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12204410	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12205265	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12206978	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12207133	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12207161	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12208330	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12208504	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12208518	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12213566	0.83[EUR][1000 genomes]
rs12214256	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12214319	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12214838	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12215031	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12524104	0.83[EUR][1000 genomes]
rs12660397	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12660863	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12661700	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12662098	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12662192	0.83[EUR][1000 genomes]
rs12664792	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13198970	0.83[EUR][1000 genomes]
rs1538085	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1577822	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1577825	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1577826	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2152804	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2152805	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2152806	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2184908	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2184909	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35108842	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3927649	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4112782	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4301283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4391244	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4435924	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4452620	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56926265	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58459798	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60859906	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61108768	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6453836	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66901250	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67346819	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68129843	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6913829	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6922535	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7747071	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7749046	0.83[EUR][1000 genomes]
rs7763209	0.80[EUR][1000 genomes]
rs7770132	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7770314	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9443175	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9447487	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9447507	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029503	chr6:63033365-63698355	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv532026	chr6:63085396-63698477	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv917014	chr6:63085410-63698365	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv885972	chr6:63241352-63615339	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv885973	chr6:63241352-63630759	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv885974	chr6:63241352-63672200	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv885979	chr6:63380661-63753657	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv885982	chr6:63460047-63658063	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv885983	chr6:63496747-63652377	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv821649	chr6:63511879-63888251	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv885984	chr6:63534312-63722285	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv885985	chr6:63534312-63753657	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv885986	chr6:63534312-63774385	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv885987	chr6:63585140-63630759	Strong transcription Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63613000-63614600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:63614200-63614800	Enhancers	HUES48 Cell Line	embryonic stem cell

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