Variant report

Variant	rs4462291
Chromosome Location	chr11:26718986-26718987
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10734383	0.83[AFR][1000 genomes]
rs10742155	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4562782	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4923382	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6484244	1.00[AMR][1000 genomes]
rs6484245	1.00[AMR][1000 genomes]
rs7930089	0.90[AFR][1000 genomes]
rs7943195	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26704600-26719200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26717200-26721600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:26717600-26719200	Enhancers	Colonic Mucosa	Colon
4	chr11:26718400-26719000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:26718800-26719800	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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