Variant report

Variant	rs4463782
Chromosome Location	chr10:1097688-1097689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:1093402-1097928	K562	blood:	n/a	n/a
2	JUND	chr10:1097571-1097741	K562	blood:	n/a	n/a
3	FOS	chr10:1097615-1097742	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr10:1097468-1098475	HepG2	liver:	n/a	n/a
5	POLR2A	chr10:1093578-1097740	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr10:1093469-1098007	GM12891	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:1094730..1096731-chr10:1096992..1098586,2	MCF-7	breast:
2	chr10:1090197..1098635-chr10:1098667..1108160,39	K562	blood:
3	chr10:1083077..1085466-chr10:1096305..1099633,3	MCF-7	breast:
4	chr10:1086551..1092852-chr10:1093358..1097808,14	MCF-7	breast:
5	chr10:976200..979208-chr10:1093606..1097726,5	MCF-7	breast:
6	chr10:1033990..1039615-chr10:1093691..1098446,7	MCF-7	breast:
7	chr10:1033680..1035425-chr10:1096903..1098612,2	MCF-7	breast:

No data

Variant related genes	Relation type
WDR37	TF binding region
IDI1	TF binding region
ENSG00000047056	Chromatin interaction
ENSG00000107929	Chromatin interaction
ENSG00000205740	Chromatin interaction
ENSG00000107937	Chromatin interaction
ENSG00000067064	Chromatin interaction
ENSG00000229869	Chromatin interaction
ENSG00000238924	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12762955	0.83[ASN][1000 genomes]
rs12767171	0.83[ASN][1000 genomes]
rs12783621	0.83[ASN][1000 genomes]
rs12784928	0.83[ASN][1000 genomes]
rs35657988	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7072554	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7075188	0.83[ASN][1000 genomes]
rs7089968	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7100196	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72760934	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72760935	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
3	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
11	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1048254	chr10:1016006-1146595	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
16	nsv1040178	chr10:1024910-1126104	Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
17	nsv540410	chr10:1024910-1126104	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
18	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
19	nsv1046220	chr10:1064024-1188998	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
20	nsv894723	chr10:1073684-1259485	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
21	nsv5532	chr10:1079499-1101700	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
22	nsv894724	chr10:1084942-1116294	Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1095800-1102000	Weak transcription	Spleen	Spleen
2	chr10:1096000-1097800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:1096000-1098200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:1096000-1098400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:1096000-1098600	Weak transcription	Ovary	ovary
6	chr10:1096000-1099600	Weak transcription	Pancreas	Pancrea
7	chr10:1096000-1101800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:1096000-1101800	Weak transcription	Gastric	stomach
9	chr10:1096200-1100800	Weak transcription	Aorta	Aorta
10	chr10:1096400-1097800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:1096400-1098400	Weak transcription	Right Ventricle	heart
12	chr10:1096400-1098800	Genic enhancers	Brain Germinal Matrix	brain
13	chr10:1096600-1097800	Transcr. at gene 5' and 3'	Dnd41	blood
14	chr10:1096600-1100000	Genic enhancers	Liver	Liver
15	chr10:1096800-1097800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:1096800-1097800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:1096800-1097800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:1096800-1097800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:1096800-1097800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:1096800-1097800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:1096800-1097800	Genic enhancers	Duodenum Mucosa	Duodenum
22	chr10:1096800-1097800	Weak transcription	Fetal Intestine Small	intestine
23	chr10:1096800-1097800	Enhancers	HSMMtube	muscle
24	chr10:1096800-1098000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr10:1096800-1098000	Weak transcription	Thymus	Thymus
26	chr10:1096800-1098200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:1096800-1098200	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr10:1096800-1098200	Weak transcription	Brain Anterior Caudate	brain
29	chr10:1096800-1098200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:1096800-1098200	Enhancers	NHEK	skin
31	chr10:1096800-1098400	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr10:1096800-1098600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:1096800-1098600	Weak transcription	Fetal Kidney	kidney
34	chr10:1096800-1098600	Weak transcription	Lung	lung
35	chr10:1096800-1098600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr10:1096800-1099400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:1096800-1099600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:1096800-1099600	Weak transcription	Colonic Mucosa	Colon
39	chr10:1096800-1099800	Strong transcription	Primary B cells from peripheral blood	blood
40	chr10:1096800-1099800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:1096800-1099800	Weak transcription	Psoas Muscle	Psoas
42	chr10:1096800-1100000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:1096800-1100200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:1096800-1100200	Strong transcription	Fetal Muscle Leg	muscle
45	chr10:1096800-1100400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr10:1096800-1100600	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:1096800-1100800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr10:1096800-1100800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:1096800-1100800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr10:1096800-1100800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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