Variant report

Variant	rs4464862
Chromosome Location	chr7:3338949-3338950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3254030..3256348-chr7:3338235..3340171,2	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10255389	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10255605	0.80[AMR][1000 genomes]
rs10263832	0.84[ASN][1000 genomes]
rs10435012	0.86[ASN][1000 genomes]
rs10435013	0.88[ASN][1000 genomes]
rs10435014	0.87[ASN][1000 genomes]
rs10435102	0.87[ASN][1000 genomes]
rs10435103	0.85[ASN][1000 genomes]
rs10435104	0.88[ASN][1000 genomes]
rs10807839	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10951153	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1112281	0.80[AMR][1000 genomes]
rs1112758	0.82[EUR][1000 genomes]
rs11486822	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11765903	0.83[AMR][1000 genomes]
rs11766702	0.83[EUR][1000 genomes]
rs11770681	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11771755	0.87[ASN][1000 genomes]
rs12532848	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12534906	0.83[EUR][1000 genomes]
rs12535065	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12535505	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12537325	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12537420	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12538134	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12540385	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12666381	0.88[ASN][1000 genomes]
rs12700766	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12700767	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12700816	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12700827	0.82[AMR][1000 genomes]
rs13225681	0.83[EUR][1000 genomes]
rs1404873	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1807849	0.83[EUR][1000 genomes]
rs1880610	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1915983	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2340846	0.80[AMR][1000 genomes]
rs34825038	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34834420	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35154693	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35218591	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35630637	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35785661	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4236323	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4286835	0.82[AMR][1000 genomes]
rs4311565	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4343998	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4507662	0.82[EUR][1000 genomes]
rs4722667	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4722679	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4722695	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4722705	0.80[ASN][1000 genomes]
rs4722716	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4722735	0.83[EUR][1000 genomes]
rs4722775	0.81[AMR][1000 genomes]
rs5006696	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55886034	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55948465	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55986112	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6461984	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6462059	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6462061	0.82[AMR][1000 genomes]
rs6462068	0.83[AMR][1000 genomes]
rs66604259	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs68135341	0.83[EUR][1000 genomes]
rs6946541	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6946678	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6959185	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6966730	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6967281	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6978381	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73046607	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73046641	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7457935	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7776539	0.86[ASN][1000 genomes]
rs7777327	0.86[ASN][1000 genomes]
rs7781694	0.82[AMR][1000 genomes]
rs7783666	0.88[ASN][1000 genomes]
rs7784336	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7784497	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7790184	0.82[AMR][1000 genomes]
rs7794698	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7795899	0.86[ASN][1000 genomes]
rs7799953	0.86[ASN][1000 genomes]
rs7804333	0.83[EUR][1000 genomes]
rs7808934	0.82[AMR][1000 genomes]
rs7809446	0.81[AMR][1000 genomes]
rs939912	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9654984	0.87[ASN][1000 genomes]
rs9655268	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464264	chr7:3194156-3349625	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv605880	chr7:3194156-3349625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1023127	chr7:3216344-3466223	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2758100	chr7:3286625-3560229	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2759500	chr7:3286625-3560229	Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1019515	chr7:3300048-3479972	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv887324	chr7:3308195-3400105	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv1803572	chr7:3327994-3341589	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv605885	chr7:3337081-3340551	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3334800-3339600	Weak transcription	Pancreas	Pancrea
2	chr7:3335000-3340000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:3337600-3339800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:3338200-3339000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:3338200-3339400	Enhancers	Adipose Nuclei	Adipose
6	chr7:3338400-3339400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:3338600-3339000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:3338600-3339600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:3338600-3340200	Enhancers	NHDF-Ad	bronchial

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