Variant report
| Variant | rs4465305 |
|---|---|
| Chromosome Location | chr10:59424583-59424584 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11005825 | 1.00[ASN][1000 genomes] |
| rs2393289 | 1.00[ASN][1000 genomes] |
| rs2393290 | 1.00[ASN][1000 genomes] |
| rs2393292 | 1.00[ASN][1000 genomes] |
| rs2393293 | 1.00[ASN][1000 genomes] |
| rs2393294 | 1.00[ASN][1000 genomes] |
| rs2393295 | 1.00[ASN][1000 genomes] |
| rs2393299 | 1.00[ASN][1000 genomes] |
| rs2393300 | 1.00[ASN][1000 genomes] |
| rs2393341 | 1.00[ASN][1000 genomes] |
| rs2393342 | 1.00[ASN][1000 genomes] |
| rs2393343 | 1.00[ASN][1000 genomes] |
| rs2393344 | 1.00[ASN][1000 genomes] |
| rs2393351 | 1.00[ASN][1000 genomes] |
| rs4272723 | 1.00[ASN][1000 genomes] |
| rs4345889 | 1.00[ASN][1000 genomes] |
| rs4391752 | 1.00[ASN][1000 genomes] |
| rs4400716 | 1.00[ASN][1000 genomes] |
| rs4562731 | 1.00[ASN][1000 genomes] |
| rs4570510 | 1.00[ASN][1000 genomes] |
| rs4935704 | 1.00[ASN][1000 genomes] |
| rs4935706 | 1.00[ASN][1000 genomes] |
| rs7083549 | 1.00[ASN][1000 genomes] |
| rs7092422 | 1.00[ASN][1000 genomes] |
| rs7095406 | 1.00[ASN][1000 genomes] |
| rs7095419 | 1.00[ASN][1000 genomes] |
| rs7096050 | 1.00[ASN][1000 genomes] |
| rs7096327 | 1.00[ASN][1000 genomes] |
| rs7894500 | 1.00[ASN][1000 genomes] |
| rs7894780 | 1.00[ASN][1000 genomes] |
| rs7906987 | 1.00[ASN][1000 genomes] |
| rs7907086 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054968 | chr10:59165968-59426800 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv895550 | chr10:59217371-59537773 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv895552 | chr10:59373302-59472580 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv895553 | chr10:59374867-59585586 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:59424400-59425000 | Enhancers | HUES64 Cell Line | embryonic stem cell |
