Variant report

Variant	rs4465588
Chromosome Location	chr15:92295863-92295864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11853241	0.88[CEU][hapmap]
rs11854843	1.00[CEU][hapmap]
rs11854868	1.00[CEU][hapmap]
rs11855064	0.80[CEU][hapmap]
rs11858519	1.00[CEU][hapmap]
rs4130067	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv570449	chr15:92237795-92334756	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3355403	chr15:92291548-92295946	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1042176	chr15:92294930-92329264	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4465588	MRPS11	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92293400-92296200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92294400-92296000	Enhancers	Brain Angular Gyrus	brain
3	chr15:92294400-92296200	Enhancers	Brain Cingulate Gyrus	brain
4	chr15:92294400-92296200	Enhancers	Brain Substantia Nigra	brain
5	chr15:92294400-92297400	Enhancers	Brain Hippocampus Middle	brain
6	chr15:92295000-92296000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:92295000-92296000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:92295000-92296200	Enhancers	Fetal Lung	lung
9	chr15:92295000-92297200	Enhancers	Ovary	ovary
10	chr15:92295400-92308400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:92295600-92296000	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr15:92295800-92296000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr15:92295800-92296200	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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