Variant report

Variant	rs4466373
Chromosome Location	chr8:110085866-110085867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11987492	0.85[AMR][1000 genomes]
rs12547435	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13268119	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13275686	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13282524	0.84[AMR][1000 genomes]
rs36051160	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4469429	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022273	chr8:110026712-110146600	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539715	chr8:110026712-110146600	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891271	chr8:110054427-110101683	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110079200-110089800	Weak transcription	Left Ventricle	heart
2	chr8:110083800-110086400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:110084000-110086400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:110084200-110086000	Enhancers	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links