Variant report

Variant	rs446763
Chromosome Location	chr21:47371484-47371485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:47369271..47372181-chr21:47376875..47378914,2	MCF-7	breast:
2	chr21:47369464..47371619-chr21:47394987..47396620,2	MCF-7	breast:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11089022	0.86[CEU][hapmap]
rs11089030	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11700515	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11700554	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11700659	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11700719	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11700929	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11702443	0.87[CEU][hapmap]
rs11702467	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11702478	0.89[CEU][hapmap]
rs11702503	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11702616	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11702691	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12627257	0.91[CEU][hapmap]
rs1547240	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs1736419	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1736420	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1736422	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1736423	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1736425	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1783075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1883046	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1883047	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2070437	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2075885	0.83[CEU][hapmap]
rs2075908	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2075909	0.84[ASN][1000 genomes]
rs2150459	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2776403	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2839027	0.87[CEU][hapmap]
rs2839042	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2839043	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs2839044	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2839045	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs2839046	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2839048	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2839051	0.96[CEU][hapmap];0.89[CHB][hapmap]
rs2839052	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2839060	0.94[CHB][hapmap]
rs373617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3788219	0.87[CEU][hapmap]
rs379939	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs381083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs386633	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs395418	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs409280	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs411868	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs413886	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs417745	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs417972	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs418241	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs418431	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs419348	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs420270	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs426594	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs431609	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs435299	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs437264	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs440207	0.84[ASN][1000 genomes]
rs442400	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs444774	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs452332	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs452877	0.87[AMR][1000 genomes]
rs4819162	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs4819164	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs4819168	0.84[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs7277160	0.84[ASN][1000 genomes]
rs7277877	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7278816	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7279643	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7281469	0.95[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap]
rs7281573	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7282661	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7283763	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs8132054	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs8133743	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs8134872	0.86[CEU][hapmap]
rs9975216	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531546	chr21:46504151-47411772	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
2	nsv1058665	chr21:46719445-47634282	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	91 gene(s)	inside rSNPs	diseases
3	nsv544486	chr21:46719445-47634282	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	91 gene(s)	inside rSNPs	diseases
4	nsv1059230	chr21:46956877-47907990	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
5	nsv544491	chr21:46956877-47907990	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
6	nsv1058472	chr21:47027823-47797326	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	n/a
7	nsv544492	chr21:47027823-47797326	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	n/a
8	nsv428043	chr21:47179244-47471971	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	n/a
9	nsv1065959	chr21:47188878-48091343	Bivalent Enhancer Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	n/a
10	nsv531580	chr21:47221774-48090317	Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	n/a
11	nsv914079	chr21:47243074-47650362	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	n/a
12	nsv914083	chr21:47265786-47453954	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
13	nsv918103	chr21:47297067-48089510	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	n/a
14	nsv869002	chr21:47297268-47963186	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	n/a
15	nsv914085	chr21:47342116-47433055	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
16	esv1848879	chr21:47343462-47455584	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
17	nsv914086	chr21:47352625-47445184	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
18	nsv914087	chr21:47352625-47453954	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
19	nsv470910	chr21:47353775-48084988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	n/a
20	nsv914088	chr21:47358915-47419012	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:47367400-47373000	Weak transcription	Right Atrium	heart
2	chr21:47369000-47373000	Weak transcription	Left Ventricle	heart
3	chr21:47369600-47371800	Enhancers	Ovary	ovary
4	chr21:47369800-47371600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr21:47369800-47372000	Enhancers	Brain Germinal Matrix	brain
6	chr21:47370200-47371800	Enhancers	Fetal Lung	lung
7	chr21:47370200-47372000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr21:47370200-47372200	Enhancers	Fetal Stomach	stomach
9	chr21:47370400-47371600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr21:47370600-47371600	Enhancers	HMEC	breast
11	chr21:47370600-47375400	Enhancers	Fetal Muscle Leg	muscle
12	chr21:47370800-47371600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr21:47370800-47371600	Enhancers	HSMM	muscle
14	chr21:47370800-47371800	Enhancers	HSMMtube	muscle
15	chr21:47370800-47372200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr21:47370800-47379600	Weak transcription	Right Ventricle	heart
17	chr21:47371000-47371600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr21:47371000-47371600	Enhancers	Colon Smooth Muscle	Colon
19	chr21:47371000-47372000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr21:47371000-47372400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr21:47371000-47372400	Weak transcription	NH-A	brain
22	chr21:47371000-47372800	Weak transcription	Aorta	Aorta
23	chr21:47371000-47373000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr21:47371000-47373600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr21:47371000-47374400	Enhancers	Placenta	Placenta
26	chr21:47371200-47371800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr21:47371200-47372600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr21:47371200-47373200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr21:47371200-47373400	Weak transcription	Fetal Kidney	kidney
30	chr21:47371200-47374200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr21:47371200-47377200	Weak transcription	Adipose Nuclei	Adipose
32	chr21:47371400-47371600	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr21:47371400-47371600	Enhancers	NHEK	skin
34	chr21:47371400-47373000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr21:47371400-47373000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr21:47371400-47373000	Enhancers	Stomach Smooth Muscle	stomach
37	chr21:47371400-47373200	Weak transcription	NHDF-Ad	bronchial
38	chr21:47371400-47374200	Weak transcription	H1 Cell Line	embryonic stem cell

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