Variant report
| Variant | rs4468475 |
|---|---|
| Chromosome Location | chr13:96170045-96170046 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:96168785..96171227-chr13:96172406..96174921,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1033953 | 0.82[AMR][1000 genomes] |
| rs1318817 | 0.80[AMR][1000 genomes] |
| rs2148046 | 0.82[AMR][1000 genomes] |
| rs2148047 | 0.82[AMR][1000 genomes] |
| rs2389313 | 0.82[AMR][1000 genomes] |
| rs2892733 | 0.82[AMR][1000 genomes] |
| rs4375536 | 0.82[AMR][1000 genomes] |
| rs4509883 | 0.80[AMR][1000 genomes] |
| rs4558269 | 0.82[AMR][1000 genomes] |
| rs4597179 | 0.82[EUR][1000 genomes] |
| rs4635199 | 0.82[AMR][1000 genomes] |
| rs7334779 | 0.82[AMR][1000 genomes] |
| rs7336459 | 0.82[AMR][1000 genomes] |
| rs7336934 | 0.82[AMR][1000 genomes] |
| rs9524997 | 0.82[AMR][1000 genomes] |
| rs9525002 | 0.82[AMR][1000 genomes] |
| rs971305 | 0.82[AMR][1000 genomes] |
| rs971306 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752652 | chr13:96059024-96181597 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv900933 | chr13:96138087-96215289 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:96169000-96170800 | Enhancers | Primary neutrophils fromperipheralblood | blood |
