Variant report
| Variant | rs4468993 |
|---|---|
| Chromosome Location | chr3:161812637-161812638 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1033058 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1033059 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10513577 | 0.84[EUR][1000 genomes] |
| rs11716576 | 0.85[EUR][1000 genomes] |
| rs13317077 | 0.84[EUR][1000 genomes] |
| rs13319309 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13319565 | 0.85[EUR][1000 genomes] |
| rs13323724 | 0.84[EUR][1000 genomes] |
| rs13323875 | 0.84[EUR][1000 genomes] |
| rs2136713 | 0.84[EUR][1000 genomes] |
| rs2175264 | 0.84[EUR][1000 genomes] |
| rs34264430 | 0.81[EUR][1000 genomes] |
| rs34497191 | 0.89[EUR][1000 genomes] |
| rs34640718 | 0.90[EUR][1000 genomes] |
| rs34834722 | 0.89[EUR][1000 genomes] |
| rs4133847 | 0.85[EUR][1000 genomes] |
| rs4333098 | 0.81[EUR][1000 genomes] |
| rs62278898 | 0.89[EUR][1000 genomes] |
| rs62278942 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62280492 | 0.84[EUR][1000 genomes] |
| rs961839 | 0.81[EUR][1000 genomes] |
| rs9822058 | 0.81[EUR][1000 genomes] |
| rs9834707 | 0.81[EUR][1000 genomes] |
| rs9841291 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9848787 | 0.85[EUR][1000 genomes] |
| rs9850613 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460919 | chr3:161799090-162094430 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv592144 | chr3:161799090-162094430 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv877713 | chr3:161807012-161847016 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv877714 | chr3:161807012-161854219 | Enhancers Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv877715 | chr3:161807012-161862628 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | esv12869 | chr3:161808602-161816680 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161812400-161812800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
