Variant report

Variant	rs4469219
Chromosome Location	chr5:90443581-90443582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90441554..90443598-chr5:90677137..90680597,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12697806	0.96[ASN][1000 genomes]
rs1972326	0.84[ASN][1000 genomes]
rs1972327	0.96[ASN][1000 genomes]
rs2950847	0.96[ASN][1000 genomes]
rs2950848	0.96[ASN][1000 genomes]
rs2950857	0.96[ASN][1000 genomes]
rs2950859	0.96[ASN][1000 genomes]
rs2973440	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90432000-90444000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:90432400-90444200	Weak transcription	A549	lung
3	chr5:90435600-90443800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:90438000-90446000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:90438000-90447800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:90438200-90446000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:90439000-90444200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:90440000-90447600	Weak transcription	Right Ventricle	heart
9	chr5:90440200-90446000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:90440200-90446000	Weak transcription	Aorta	Aorta
11	chr5:90440200-90446000	Weak transcription	Lung	lung
12	chr5:90440400-90446000	Weak transcription	Gastric	stomach
13	chr5:90441000-90446000	Weak transcription	Right Atrium	heart
14	chr5:90441200-90446000	Weak transcription	NHLF	lung
15	chr5:90441400-90445800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:90441400-90446000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:90441400-90446000	Weak transcription	Stomach Mucosa	stomach
18	chr5:90441400-90446000	Weak transcription	NHDF-Ad	bronchial
19	chr5:90441600-90446000	Weak transcription	HUVEC	blood vessel
20	chr5:90442200-90446000	Weak transcription	Fetal Brain Male	brain
21	chr5:90442200-90446000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr5:90442400-90443600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr5:90442400-90444600	Weak transcription	Psoas Muscle	Psoas
24	chr5:90442400-90446000	Weak transcription	Brain Angular Gyrus	brain
25	chr5:90442400-90471600	Weak transcription	Brain Germinal Matrix	brain
26	chr5:90442600-90445800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:90442600-90445800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr5:90442600-90446000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:90442600-90447400	Weak transcription	Brain Hippocampus Middle	brain
30	chr5:90442600-90447600	Weak transcription	Osteobl	bone
31	chr5:90442600-90458400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr5:90442800-90443800	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr5:90442800-90445800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr5:90442800-90445800	Weak transcription	Hela-S3	cervix
35	chr5:90442800-90446000	Weak transcription	Ovary	ovary
36	chr5:90443000-90446000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr5:90443000-90446000	Weak transcription	Fetal Lung	lung
38	chr5:90443400-90444000	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr5:90443400-90446000	Weak transcription	Brain Anterior Caudate	brain
40	chr5:90443400-90446000	Weak transcription	Placenta	Placenta

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