Variant report

Variant	rs4469380
Chromosome Location	chr7:118816115-118816116
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117992682..117993833-chr7:118815599..118816513,3	MCF-7	breast:
2	chr7:117992579..117993168-chr7:118815740..118816656,2	K562	blood:
3	chr7:117390803..117391431-chr7:118815895..118816706,2	MCF-7	breast:
4	chr7:118510382..118510908-chr7:118815972..118816682,2	MCF-7	breast:
5	chr7:118558392..118559287-chr7:118815693..118816489,5	MCF-7	breast:
6	chr7:118558904..118559746-chr7:118816086..118816731,2	MCF-7	breast:
7	chr7:117992651..117993374-chr7:118815864..118816654,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10215330	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10224636	1.00[ASN][1000 genomes]
rs10259382	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10265701	1.00[ASN][1000 genomes]
rs10265706	1.00[ASN][1000 genomes]
rs11505941	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536780	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12706226	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13225709	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13245181	1.00[ASN][1000 genomes]
rs2402454	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2402455	0.95[ASN][1000 genomes]
rs2402463	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2402464	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402465	1.00[ASN][1000 genomes]
rs2896277	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2896278	1.00[ASN][1000 genomes]
rs4279533	0.98[ASN][1000 genomes]
rs6976018	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7456412	0.98[ASN][1000 genomes]
rs7788545	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7806771	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889098	chr7:118590050-118896639	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1825159	chr7:118640865-118842361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889099	chr7:118709754-118868426	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889100	chr7:118744450-119247571	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889101	chr7:118778802-119177670	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1793187	chr7:118794683-118834412	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1830301	chr7:118794683-118834412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1023789	chr7:118803459-118854579	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv5925	chr7:118804702-118841585	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118814000-118816600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:118814400-118818200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:118814600-118818000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:118815800-118816200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:118815800-118816200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:118815800-118816200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:118815800-118816200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:118815800-118816200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:118815800-118816200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:118815800-118816400	Enhancers	Dnd41	blood
11	chr7:118816000-118816200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:118816000-118816200	Enhancers	Adipose Nuclei	Adipose
13	chr7:118816000-118816200	Enhancers	Brain Angular Gyrus	brain
14	chr7:118816000-118816200	Enhancers	Brain Anterior Caudate	brain
15	chr7:118816000-118816200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr7:118816000-118816200	Enhancers	Brain Substantia Nigra	brain
17	chr7:118816000-118816200	Enhancers	Esophagus	oesophagus
18	chr7:118816000-118816200	Enhancers	Right Atrium	heart
19	chr7:118816000-118816200	Enhancers	Stomach Smooth Muscle	stomach
20	chr7:118816000-118817800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:118816000-118818200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links