Variant report

Variant	rs4470656
Chromosome Location	chr4:80576083-80576084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10033056	0.91[JPT][hapmap]
rs11731558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13116263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123790	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13129374	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35385700	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35780399	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35937876	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3924925	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4292357	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4353927	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4504285	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55789335	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57395415	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6534482	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67659266	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6813424	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6821475	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7683198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1005152	chr4:80549659-80814456	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4470656	ANTXR2	cis	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80575400-80577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:80575400-80578400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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