Variant report

Variant	rs4471850
Chromosome Location	chr2:181825338-181825339
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10183291	0.81[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs10207300	0.84[ASN][1000 genomes]
rs10432490	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs10803945	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10930949	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs10930951	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs11680095	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12475075	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12477135	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12613470	0.81[JPT][hapmap]
rs12614444	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs34865829	0.80[ASN][1000 genomes]
rs4618005	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4638755	0.81[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs873256	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	esv3347644	chr2:181825260-181825583	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links