Variant report

Variant	rs4472909
Chromosome Location	chr11:45699682-45699683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10734537	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10742764	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10769163	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10769164	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11038608	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11038613	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11038614	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1466068	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2197699	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs45486999	0.85[AMR][1000 genomes]
rs4755335	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4755336	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4756015	0.95[ASN][1000 genomes]
rs4756016	0.96[ASN][1000 genomes]
rs7114779	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7115047	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7115106	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7115214	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7115241	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45688000-45700600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:45699000-45700000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:45699000-45700000	Enhancers	Fetal Heart	heart
4	chr11:45699000-45700000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr11:45699000-45700600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:45699200-45699800	Enhancers	Placenta	Placenta
7	chr11:45699200-45700000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr11:45699200-45700000	Enhancers	Brain Germinal Matrix	brain
9	chr11:45699200-45700800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:45699600-45699800	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr11:45699600-45700000	Enhancers	Right Ventricle	heart
12	chr11:45699600-45700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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